Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAGDTTITIVGNLTADPELRFTPSGAAVANFTVASTPRIYDRQTGEWKDGEALFLRCNIWREAAENVAESLTRGARVIVSGRLKQRSFETREGEKRTVIEVEVDEIGPSLRYATAKVNKASRSGGFGSGSRPAPAQTSSASGDDPWGSAPASGSFGGGDDEPPF
3AFP Chain:B ((2-120))
-AGDTTITIVGNLTADPELRFTSSGAAVVNFTVASTPRI---QSGEWKDGEALFLRCNIWREAAENVAESLTRGARVIVTGRLKQRS-ETREGEKRTVVEVEVDEIGPSLRYATAKVNKA--------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3AFP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -49211 for 706 contacts (-69.7/contact) +
2D Compatibility (PS) -12366 + (NN) -3230 + (LL) -940
1D Compatibility (HY) -12400 + (ID) 5500
Total energy: -83647.0 ( -118.48 by residue)
QMean score : 0.579
(partial model without unconserved sides chains):
PDB file :
Tito_3AFP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3AFP-query.scw
PDB file :
Tito_Scwrl_3AFP.pdb
: