Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MCADAQPSGSVGLLGRNCPTATTRWRRAGEGLTAADTIEVKLWAGKPRLHPLVPKRAVGVLLAVAHGQVAKTPSATRAIAFRHVRLMRV--------RWICAG---NRGRKHKRRCTTQYRSTQASKLQLHFKLR-------QTLNRLGGLQAMVSACG
2COV Chain:D ((378-469))
-----------------------------------------------------------------PPENCQDDFNFNYVSDQEIEVYHVDKGWSAGWNYVCLNDYCLPGNKSNGAFRKTFNAVLGQDYKLTFKVEDRYGQGQQILDRNITFTTQV--CN
General information:
TITO was launched using:
RESULT:
Template:
2COV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -21163 for 486 contacts (-43.5/contact) +
2D Compatibility (PS) -7358 + (NN) 4469 + (LL) 4184
1D Compatibility (HY) -5600 + (ID) 600
Total energy: -26068.0 ( -53.64 by residue)
QMean score : 0.158
(partial model without unconserved sides chains):
PDB file :
Tito_2COV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2COV-query.scw
PDB file :
Tito_Scwrl_2COV.pdb
: