Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MESEPLYKLKAEFFKTLAHPARIRILELLVERDRSVGELLSSDVGLESSNLSQQLGVLRRAGVVAARRDGNAMIYSIAAPDIAELLAVARKVLARVLSDRVAVLEDLRAGGSAT
1R1V Chain:B ((17-94))
----------TEIFKALGDYNRIRIMELLSVSEASVGHI-SHQLNLSQSNVSHQLKLLKSVHLVKAKRQGQSMIYSLDDIHVATMLKQA-------------------------
General information:
TITO was launched using:
RESULT:
Template:
1R1V.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -58555 for 523 contacts (-112.0/contact) +
2D Compatibility (PS) -7970 + (NN) -1490 + (LL) 3112
1D Compatibility (HY) -9200 + (ID) 1650
Total energy: -75753.0 ( -144.84 by residue)
QMean score : 0.677
(partial model without unconserved sides chains):
PDB file :
Tito_1R1V.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1R1V-query.scw
PDB file :
Tito_Scwrl_1R1V.pdb
: