Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKKPRNPADYVIGDDVEVSDVDLKQEEVYVDGERLTDERVEQMASESLRLAREREANLIPGGKSLSGGSAHSPAVQVVVSKATHAKLKELARSRKMSVSKLLRPVLDEFVQRETGRILPRR
1NLA Chain:A ((5-51))
----------------------------------------------------------------------SKMPQFLNRWPREVLDLVRKVAEENGRSVNSEIYQRVMESFKKEGRI-----
General information:
TITO was launched using:
RESULT:
Template:
1NLA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -8725 for 237 contacts (-36.8/contact) +
2D Compatibility (PS) -4909 + (NN) -2073 + (LL) 4248
1D Compatibility (HY) -800 + (ID) 300
Total energy: -12559.0 ( -52.99 by residue)
QMean score : 0.733
(partial model without unconserved sides chains):
PDB file :
Tito_1NLA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NLA-query.scw
PDB file :
Tito_Scwrl_1NLA.pdb
: