Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTPQARPARRADVRELSRTMARAFYDDPVMSWLLSNDNARTARLTRLFATIVRHQHLAGGGVEVARG-AAGIGGAALWDPPDRWRESRRQQLAMTPGFLRVFGFRTAKARAALDVMMRVH-PEEPHWYLAAIGSDPTVRGQGFGQVLMRSRLDRCDAEHCP-AYLESTKPENVPYYQRFGFRVTREIALPDAGPPLWAMWREPR
3QB8 Chain:A ((1-170))
-MYTLIKLTSEYTSRAISFTSRNFVASEPTSIALKLTTCD---FTTSFQNIMKQC-VDYGHSFAFVDADDNIKAQILNIPYDAYENMHY------GNI-RETD----PMF---DLFGNLDSYTPDDKCLYVFAIGSEVTGKGLATKLLKKTIEESSSHGFKYIYGDCTNIISQNMFEKHGFETVGSVKY---------------
General information:
TITO was launched using:
RESULT:
Template:
3QB8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -57504 for 1297 contacts (-44.3/contact) +
2D Compatibility (PS) -17691 + (NN) -8272 + (LL) 2916
1D Compatibility (HY) -4400 + (ID) 1150
Total energy: -86101.0 ( -66.38 by residue)
QMean score : 0.379
(partial model without unconserved sides chains):
PDB file :
Tito_3QB8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3QB8-query.scw
PDB file :
Tito_Scwrl_3QB8.pdb
: