Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSNRIVLEPSADHPITIEPTNRRVQVRVNGEVVADTAAALCLQEASY-PAVQYIPLADVVQDRLIRTETSTYCPFKGEASYYSVTTDAGDIVDDVMWTYENPYPAVAAIAGHVACYPDKAEISIFPG
3DJM Chain:A ((4-114))
----------MNNHIRLRKAEGKWVIRTDSAVLGETLNAIELTEG-SRDPVIYFPREDVAMVMFDKSEKVTACPLKGEASYYSIVG-ASGTLKDAAWSYESPKEGLEAIAGYLAFAPDCTKVG----
General information:
TITO was launched using:
RESULT:
Template:
3DJM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -80904 for 780 contacts (-103.7/contact) +
2D Compatibility (PS) -11906 + (NN) -6827 + (LL) 628
1D Compatibility (HY) -5600 + (ID) 1850
Total energy: -106459.0 ( -136.49 by residue)
QMean score : 0.433
(partial model without unconserved sides chains):
PDB file :
Tito_3DJM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DJM-query.scw
PDB file :
Tito_Scwrl_3DJM.pdb
: