Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTPFDDPQAELAWMFLQ-SLCEGGDLDEGFALLSNDFTYWSIVTRTELDKKTFRRAVERRK-QVF-EVNIELIRCVNEGETVVVEGHCDGVS--------ADRTRYDSPFVCIFETRDGMIISLREYSDTQSLAEVYPVACATPGRC
4LGQ Chain:A ((6-139))
----MDTSKAVIQRFNREVIEN-GDMAAFAELVAPDFVNHSAPPGVSPGPDGFAGFFTGMLHPALSDIRVHIHEQIEENGKVVTRKTIEATHTGAFFGQPASGKRIAIHAMDIVVVRDGKYAEHWSCADLYGALAQIRA--------
General information:
TITO was launched using:
RESULT:
Template:
4LGQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -59309 for 855 contacts (-69.4/contact) +
2D Compatibility (PS) -13352 + (NN) -5467 + (LL) 320
1D Compatibility (HY) -400 + (ID) 950
Total energy: -79158.0 ( -92.58 by residue)
QMean score : 0.488
(partial model without unconserved sides chains):
PDB file :
Tito_4LGQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4LGQ-query.scw
PDB file :
Tito_Scwrl_4LGQ.pdb
: