Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDSAMARAIRSGD-DAEVADGLTRREHDIL----AFERQWWKFAGVKEEAIKELFSMSATRYYQVLN-ALVDRPEALAADPMLVKRLRRLRASRQKARAARRLGFEVT
2RQV Chain:A ((153-260))
GPLGSLYAIVLYDFKAEKADELTTYVGENLFICAHHNCEWFIAKPIGRLGGPGLVPVGFVSIIDIATGYATGNDVIEDIKSVNLPTVQEWKSNIARYKASNISLGSVE
General information:
TITO was launched using:
RESULT:
Template:
2RQV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -10118 for 581 contacts (-17.4/contact) +
2D Compatibility (PS) -9820 + (NN) 5213 + (LL) 0
1D Compatibility (HY) -1200 + (ID) 700
Total energy: -16625.0 ( -28.61 by residue)
QMean score : 0.082
(partial model without unconserved sides chains):
PDB file :
Tito_2RQV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RQV-query.scw
PDB file :
Tito_Scwrl_2RQV.pdb
: