Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTTIGTRKRVAVVTGASSGIGEATARTLAAQGFHVVAVARRADRITALANQIGGTAIVA--DVTDDAAVEALARAL----SRVDVLVNNAGGAKGLQFVADADLEHWRWMWDTNVLGTLRVTRALLPKLIDSGDGLIVTVTSIAAIEVYDGGAGYTAAKHAQGALHRTLRGELLGKPVRLTEIAPGAV-ETEFSLVRFDGDQQRADAVYAGMTPLVAADVAEVIGFVATRPSHVNLDQIVIRPRDQASASRRATHPVR
3ASV Chain:D ((2-241))
---------IVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELGDNLYIAQLDVRNRAAIEEMLASLPAEWCNIDILVNNAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHGHIINIGSTAGSWPYAGGNVYGATKAFVRQFSLNLRTDLHGTAVRVTDIEPGLVGGTEFSNVRFKGDDGKAEKTYQNTVALTPEDVSEAVWWVSTLPAHVNINTLEMMPVTQSYA---------
General information:
TITO was launched using:
RESULT:
Template:
3ASV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -130573 for 1917 contacts (-68.1/contact) +
2D Compatibility (PS) -24823 + (NN) -5463 + (LL) 1224
1D Compatibility (HY) -15200 + (ID) 4550
Total energy: -179385.0 ( -93.58 by residue)
QMean score : 0.517
(partial model without unconserved sides chains):
PDB file :
Tito_3ASV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3ASV-query.scw
PDB file :
Tito_Scwrl_3ASV.pdb
: