Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTVSRLRPYATTVFAEMSALATRIGAVNLGQGFPDEDGPPKMLQAAQDAIAGGVNQYPPGPGSAPLRRAIAAQRRRHFGVDYDPETEVLVTVGATEAIAAAVLGLVEPGSEVLLIEPFYDSYSPVVAMAGAHRVTVPLVPDGRGFALDADALRRAVTPRTRALIINSPHNPTGAVLSATELAAIAEIAVAANLVVITDEVYEHLVF-DHARHLPLAGFDGMAERTITISSAAKMFNCTGWKIGWACGPAELIAGVRAAKQYLSYVGGAPFQPAV--ALALDTEDAWVAALRNSLRARRDRLAAGLTEIGFAVHDSYGTYFLCAD-PRPLGYDDSTEFCAALPEKVGVAAIPMSAFCDPAAGQASQQADVWNHLVRFTFCKRDDTLDEAIRRLSVLAERPAT |
| 1V2F Chain:B ((13-367)) | -----------SIFPRMSGLAQRLGAVNLGQGFPSNPPPPFLLEAVRRAL-GRQDQYAPPAGLPALREALAEE----FAVE--PES-VVVTSGATEALYVLLQSLVGPGDEVVVLEPFFDVYLPDAFLAGAKARLVRLDLTPEGFRLDLSALEKALTPRTRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYGERPRRLR----EFAPERTFTVGSAGKRLEATGYRVGWIVGPKEFMPRLAGMRQWTSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAMGLRVYVPEGTYFLMAELP---GWD-----AFRLVEEARVALIPASAFY---------LEDPPKDLFRFAFCKTEEELHLALERLGRV------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 1V2F.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -261861 for 3016 contacts (-86.8/contact) +
2D Compatibility (PS) -39641 + (NN) -26446 + (LL) 2816
1D Compatibility (HY) -31600 + (ID) 8000
Total energy: -364732.0 ( -120.93 by residue)
QMean score : 0.525
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