Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MPDNTIQWDKDADGIVTLTMDDPSGSTNVMNEAYIESMGKAVDRLVAEKDSITGVVVASAKKTFFAGGDVKTMIQA-RPEDAGDVFNTVETIKRQLRTLETLGKPVVAAINGAALGGGLEIALACHHRIAADVKGSQLGLPEVTLGLLPGGGGVTRTVRMFGIQNAFVSVLAQGTRFKPAKAKEIGLVDELVATVEELVPAAKAWIKEELKANPD-GAGVQPWDKK----GYKMPGGTPSSPGLAA--ILPSFPSNLRKQLKGAPMPAPRAILAAAVEGAQVDFDTASRIESRYFASLVTGQVAKNMMQAFFFDLQAINAGGSRPEGIGKTPIKRIGVLGAGMMGAGIAYVSAKAGYEVVLKDVSLEAAAKGKGYSEKLEAKALERGRTTQERSDALLARITPTADAADFKGVDFVIEAVFENQELKHKVFGEIEDIVEPNAILGSNTSTLPITGLATGVKRQEDFIGIHFFSPVDKMPLVEIIKGEKTSDEALARVFDYTLAIGKTPIVVNDSRGFFTSRVIGTFVNEALAMLGEGVEPASIEQAGSQAGYPAPPLQLSDELNLELMHKIAVATRKGVEDAGGTYQPHPAEAVVEKMIELGRSGRLKGAGFYEYADGKRSGLWPGLRETFKSGSSQPPL--------QDMIDRMLFAEALETQKCLDEGVLTSTADANIGSIMGIGFPPWTGGSAQFIVGYSGPAGTGKAAFVARARELAAAYGDRFLPPESLLS |
1WDM Chain:B ((16-691)) | -------------GIVELKFDLKGESVNKFNRLTLNELRQAVDAIKADA-SVKGVIVSSGKDVFIVGADITEFVENFKLPDAELIAGNLEA-NKIFSDFEDLNVPTVAAINGIALGGGLEMCLAADFRVMAD--SAKIGLPEVKLGIYPGFGGTVRLPRLIGVDNA-VEWIASGKENRAEDALKVSAVDAVV-TADKLGAAALDLIKRAISGELDYKAKRQPKLEKLKLNAIEQMMAFETAKGFVAGQAGPNYP---------APVEAIKTIQKAANFGR----DKALEVEAAGFAKLAKTS-ASNCLIGLFLNDQELKKKAKVYDKIAKD-VKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYGDFGNVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTISISLLAKALKRPENFVGMHFFNPVHMMPLVEVIRGEKSSDLAVATTVAYAKKMGKNPIVVNDCPGFLVNRVLFPYFGGFAKLVSAGVDFVRIDKVMEKFGWPMGPAYLMDVVGIDTGHHGRDVMAEGFPD----RMKDDRRSAIDALYEAKRLGQKNGKGFYAY-E-----KQKKLVDSSVLEVLKPIVYEQRDVTDEDIINWMMIPLCLETVRCLEDGIVETAAEADMGLVYGIGFPLFRGGALRYI------DSIGVAEFVALADQYA--------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1WDM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -236748 for 5771 contacts (-41.0/contact) +
2D Compatibility (PS) -71535 + (NN) -28086 + (LL) 2144
1D Compatibility (HY) -47200 + (ID) 11950
Total energy: -393375.0 ( -68.16 by residue)
QMean score : 0.519
|
|
|