Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTYETILVERDQRVGIITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSAKAFAAGADIKEMADLTFADAFTADFFATWGKLAAVRTPTIAAVAGYALGGGCELAMMCDVLIAADTAKFGQPEIKLGVLPGMGGSQRLTRAIGKAKAMDLILTGRTMDAAEAERSGLVSRVVPADDLLTEARATATTISQMSASAARMAKEAVNRAFESSLSEGLLYERRLFHSAFATEDQSEGMAAFIEKRAPQFTHR
3Q0J Chain:F ((2-255))
MTYETILVERDQRVGIITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSAKAFAAGADIKEMADLTFADAFTADFFATWGKLAAVRTPTIAAVAGYALGGGCELAMMCDVLIAADTAKFGQPEIKLGVLPGMGGSQRLTRAIGKAKAMDLILTGRTMDAAEAERSGLVSRVVPADDLLTEARATATTISQMSASAARMAKEAVNRAFESSLSEGLLYERRLFHSAFATEDQSEGMAAFIEKRAPQF---
General information:
TITO was launched using:
RESULT:
Template:
3Q0J.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -126688 for 2094 contacts (-60.5/contact) +
2D Compatibility (PS) -27478 + (NN) -10236 + (LL) 196
1D Compatibility (HY) -30800 + (ID) 12700
Total energy: -207706.0 ( -99.19 by residue)
QMean score : 0.411
(partial model without unconserved sides chains):
PDB file :
Tito_3Q0J.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3Q0J-query.scw
PDB file :
Tito_Scwrl_3Q0J.pdb
: