Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPDLPSLDASGVRLAIVASSWHGKICDALLDGARKVAAGCGLDDPTVVRVLGAIEIPVVAQELARNHDAVVALGVVIRGQTPHFDYVCDAVTQGLTRVSLDSSTPIANGVLTTNTEEQALDRAGLPTSAEDKGAQATVAALATALTLRELRAHS
2VI5 Chain:H ((13-160))
------LDASGVRLAIVASSWHGKICDALLDGARKVAAGCGLDDPTVVRVLGAIEIPVVAQELARNHDAVVALGVVIRGQTPHFDYVCDAVTQGLTRVSLDSSTPIANGVLTTNTEEQALDRAGLPTSAEDKGAQATVAALATALTLRELRAHS
General information:
TITO was launched using:
RESULT:
Template:
2VI5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -117457 for 1237 contacts (-95.0/contact) +
2D Compatibility (PS) -16703 + (NN) -11930 + (LL) 0
1D Compatibility (HY) -18400 + (ID) 7400
Total energy: -171890.0 ( -138.96 by residue)
QMean score : 0.665
(partial model without unconserved sides chains):
PDB file :
Tito_2VI5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VI5-query.scw
PDB file :
Tito_Scwrl_2VI5.pdb
: