Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPLSGEYAPSPLDWSREQADTYMKSGGTEGTQLQGKPVILLTTVGAKTGKLRKTPLMRVEHDGQYAIVASLGGAPKNPVWYHNVVKNPRVELQDGTVTGDYDAREVFGDEKAIWWQRAVAVWPDYASYQTKTDRQIPVFVLTPVRAGG
3R5W Chain:L ((4-112))
----------------------------------KIPVALLTTTGRKTGQPRVNPLYFLRDGGRVIVAASKGGAEKNPMWYLNLKANPKVQVQIKKEVLDLTARDATDEERAEYWPQLVTMYPSYQDYQSWTDRTIPIVVCEP-----
General information:
TITO was launched using:
RESULT:
Template:
3R5W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -55678 for 800 contacts (-69.6/contact) +
2D Compatibility (PS) -12128 + (NN) -6714 + (LL) 1284
1D Compatibility (HY) -6800 + (ID) 2350
Total energy: -82386.0 ( -102.98 by residue)
QMean score : 0.486
(partial model without unconserved sides chains):
PDB file :
Tito_3R5W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3R5W-query.scw
PDB file :
Tito_Scwrl_3R5W.pdb
: