Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTQAATRPTNDAGQDGGNNSDILVVARQQVLQRGEGLNQDQVLAVLQLPDDRL-EELLALAHEVRMRWCGPEVEVEGIISLKTGGCPEDCHFCSQSGLFASPVRSAWLDIPSLVEAAKQTAKSGATEFCIVAAVRGPDERLMAQVAAGIEAIRNEVEI-NIACSLGMLTAEQVDQLAARGVHRYNHNLETA-RSFFANVVT---THTWEERWQTLSMVRDAGME-VCCGGILGMGETLQQRAEFAAELAEL------GPDEVPLNFLNPRPGTPFADLEVMPVGDALKAVAAFRLALPRTMLRFAGGREITLGDLGAKRGILGGINA------VIVGNYLT-------TLGRPAEADLELLDELQMPLKALNASL |
| 4RTB Chain:A ((51-411)) | ---------------------------IQKLQKGERLSLIEAGIAFANDTEELDQILFWQARKVKEEIYGKRIVLFAPLYL-SNICINNCSYCSFRRENKE-LSRVRLSLEEAVDEAKAIREMGHTRILLV-MGEEPEDKTLSYLEEIIPAIYSEVDIRRINVNIAPLTLKGYERLKKLKIGTYQLFQESYNPEVYREVHLDGPKTNFLWRLNAVERAIEAGIDDIGIGALFGLGDPLFELLGVIAHADYLKKKFGIGPHTVSVPRLKPALNSVFSNDYKISDHKFKKIVALLRIMLPYTGIILSTREPQHLR---DE-LVELGVSQMSAASRTGPGEYRGERQQFLL-DHRSLAEIVEVLIDKGFLPSFCTA-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4RTB.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -181489 for 2533 contacts (-71.6/contact) +
2D Compatibility (PS) -34757 + (NN) -20249 + (LL) 1288
1D Compatibility (HY) -15200 + (ID) 3350
Total energy: -253757.0 ( -100.18 by residue)
QMean score : 0.481
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