Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTYVIGSECVDVMDKSCVQECPVDCIYEGARMLYINPDECVDCGACKPACRVEAIYWEGDLPDDQHQHLGDNAAFFHQVLPGRVAPLGSPGGAAAVGPIGVDTPLVAAIPVECP
1GAO Chain:B ((2-74))
--FVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCASCEPECPAQAIFSEDEVPEDMQEFIQLNAEL---------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1GAO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -64429 for 511 contacts (-126.1/contact) +
2D Compatibility (PS) -7474 + (NN) -5054 + (LL) 1704
1D Compatibility (HY) -9600 + (ID) 1500
Total energy: -86353.0 ( -168.99 by residue)
QMean score : 0.348
(partial model without unconserved sides chains):
PDB file :
Tito_1GAO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1GAO-query.scw
PDB file :
Tito_Scwrl_1GAO.pdb
: