Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYSGVVSRTNIEIDDELVAAAQRMY--RLDSKRSAVDLALRRLVGEPLGRDEALALQGSGFDFSNDEIESFSDTDRKLADES
2MDV Chain:A ((2-38))
-------WLCIWLSDQTLEDLEKMARREGLSKSEMINVALQHYK--------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2MDV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -1887 for 172 contacts (-11.0/contact) +
2D Compatibility (PS) -3879 + (NN) -2552 + (LL) 1644
1D Compatibility (HY) -1600 + (ID) 350
Total energy: -8624.0 ( -50.14 by residue)
QMean score : 0.438
(partial model without unconserved sides chains):
PDB file :
Tito_2MDV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2MDV-query.scw
PDB file :
Tito_Scwrl_2MDV.pdb
: