Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MATTLPVQRHPRSLFPEFSELFAAFPSFAGLR--PTFDTRLMRLEDEMKEGRYEVRAELPGVDPDKDVDIMVRD-GQLTIKAERTEQKDFDG----RSEFAYGSFVRTVSLPVGADEDDIKATYDKGILTVSVAVSEGKPTE-KHIQIRSTN
1GME Chain:A ((12-150))
---------PFADLWADPFDTFRSIVPAISGGGSETAAFANARMDWKETPEAHVFKADLPGVK-KEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPKAEVKKPEVKAIQIS---
General information:
TITO was launched using:
RESULT:
Template:
1GME.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -47347 for 718 contacts (-65.9/contact) +
2D Compatibility (PS) -14396 + (NN) -8939 + (LL) 708
1D Compatibility (HY) -4000 + (ID) 1950
Total energy: -75924.0 ( -105.74 by residue)
QMean score : 0.557
(partial model without unconserved sides chains):
PDB file :
Tito_1GME.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1GME-query.scw
PDB file :
Tito_Scwrl_1GME.pdb
: