Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSATGPFSIGERVQLTDAKGRRYTMSLTPGAEFHTHRGSIAHDAVIGLEQGSVVKSSNGALFLVLRPLLVDYVMSMPRGPQVIYPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSVDRAVLDMLAPWEVLDAVSRLLVAGGVLMVYVATVTQLSRIVEALRA-KQCWTEPRAWETLQRGWNVVGLAVRPQHSMRGHTAFLVATRRLAPGAVAPAPLGRKREGRDG
3LHD Chain:A ((5-253))
---------GDKVVLVDPRGKRYLITVSK-RDFHTDLGILKLEEIIGRNFGEAIKSHKGHEFKILRPRIVDYLDKMKRGPQIVHPKDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIK--WAGFDDRVTIKLKDIYEG-IEEENVDHVILDLPQPERVVEHAAKALKPGGFFVAYTPCSNQVMRLHEKLREFKDYFMKPRTINVLVFDQEVKKECMRPRTTALVHTGYITFARRI-------------------
General information:
TITO was launched using:
RESULT:
Template:
3LHD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -153945 for 1934 contacts (-79.6/contact) +
2D Compatibility (PS) -27136 + (NN) -14670 + (LL) 416
1D Compatibility (HY) -15200 + (ID) 4550
Total energy: -215085.0 ( -111.21 by residue)
QMean score : 0.478
(partial model without unconserved sides chains):
PDB file :
Tito_3LHD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LHD-query.scw
PDB file :
Tito_Scwrl_3LHD.pdb
: