Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTGSIRSKLSAIDVRQLGTVDYRTAWQLQRELADARVAGGA-DTLLLLEHPAVYTAGRRTETHE-RP-----IDGTPVVDTDRGGKITWHGPGQLVGYPIIGLAEPLDVVNYVRRLEESLIQVCADLGLHAGRVDGR----------SGVWLPGRPARKVAAIGVRVSRATTLHGFALNCDCDLAAFTAIVPCGISDAAVTSLSAELGRTVTVDEVRATVAAAVCAALDGVLPVGDRVPSHAVPSPL
2C8M Chain:A ((2-232))
---------EGRLLLLETPGNTRMSLAYDEAIYRSFQY-GDKPILRFYRHDRSVIIGYFQVAEEEVDLDYMKKNGIMLARRYTGGGAVYHDLGDL-NFSVVRSSDDMDITSMFRTMNEAVVNSLRILGLDARPG-ELNDVSIPVNKKTDIMAGE---KKIMGAAGAMRKGAKLWHAAMLVHTDLDMLSAVLK-----ERVANVTDFV--DVSIDEVRNALIRGFSETLHIDFREDTIT---------
General information:
TITO was launched using:
RESULT:
Template:
2C8M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -122657 for 1604 contacts (-76.5/contact) +
2D Compatibility (PS) -21351 + (NN) -7014 + (LL) 616
1D Compatibility (HY) -8800 + (ID) 1600
Total energy: -160806.0 ( -100.25 by residue)
QMean score : 0.555
(partial model without unconserved sides chains):
PDB file :
Tito_2C8M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2C8M-query.scw
PDB file :
Tito_Scwrl_2C8M.pdb
: