Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSDPLHVTFVCTGNICRSPMAEKMFAQQLRHRGLGDAVRVTSAGTGNWHVGSCADERAAGVLRAHGYPTDHRAAQVGTEH-LAADLLVALDR-NHARLLRQLGVEAARVRMLRSFDPRSGTHALDVEDPYYGDHSDFEEVFAVIESALPGLHDWVDERLARNGPS
2CWD Chain:B ((1-148))
MDRPVRVLFVCLGNICRSPMAEGIFRKLLKERGLEDRFEVDSAGTGAWHVGEPMDPRARRVLEEEGAYFPHVARRLTREDVLAYDHILVMDRENLEEVLRRFPEARGKVRLV--LEELGGG---EVQDPYYGDLEDFREVYWTLEAALQAFLD------------
General information:
TITO was launched using:
RESULT:
Template:
2CWD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -86528 for 1215 contacts (-71.2/contact) +
2D Compatibility (PS) -16202 + (NN) -10527 + (LL) 912
1D Compatibility (HY) -14000 + (ID) 3350
Total energy: -129695.0 ( -106.74 by residue)
QMean score : 0.434
(partial model without unconserved sides chains):
PDB file :
Tito_2CWD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2CWD-query.scw
PDB file :
Tito_Scwrl_2CWD.pdb
: