Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSYVAAEPGVLISPTDDLQSPRSAPAAHDENADGITGGTRDDSAPNSRFQLGRRIPEATAQEGFLVRPFTQQCQIIHTEGDHAVIGVSPGNSYFSRQRLRDLGLWGL-TNF-DRVDFVYTDVHVAESYEALGDSAIEARRKAVKNIR-GVRAKITTTVNELDPAGARLCVRPMSEFQSNEAYRELHADLLTRLKDDEDLRAVCQDLVRRFLSTKVGPRQGATATQEQVCMDYICAEAPLFLDTPAILGVPSSLNCYHQSLPLAEMLYARGSGLRASRNQGHAIVTPDGSPAE |
| 2CYC Chain:A ((33-138)) | -------------------------------------------------------------------------------PLQHYIGFEISGYIHLGTGLMAGAKIADFQKAGIKTRVFLADWHSWINDK-LGGDL----EVIQEVALKYFKVGMEKSIEVMGGDPKKVEFVLASEILEKGDYWQTVIDIS------------------------------------------------------------------------------------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 2CYC.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -19414 for 721 contacts (-26.9/contact) +
2D Compatibility (PS) -11355 + (NN) -6660 + (LL) 10624
1D Compatibility (HY) -2400 + (ID) 550
Total energy: -29755.0 ( -41.27 by residue)
QMean score : 0.374
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