Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSAAGVRSTRQRAAISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVDTLHTDTGESVYRRCSEHHHHHLVCRSCGSTIEV---GDHEVEAWAAEVATKHGFSDVSHTIEIFGTCSDCRS
3F8N Chain:B ((13-139))
LKETGVRITPQRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVKELTYGDASSRFDFVTS-DHYHAICENCGKIVDFHYPGLDEVEQLAAHVT---GFKVSHHRLEIYGVCQEC--
General information:
TITO was launched using:
RESULT:
Template:
3F8N.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -45412 for 751 contacts (-60.5/contact) +
2D Compatibility (PS) -13888 + (NN) -6419 + (LL) 276
1D Compatibility (HY) -10800 + (ID) 2100
Total energy: -78343.0 ( -104.32 by residue)
QMean score : 0.506
(partial model without unconserved sides chains):
PDB file :
Tito_3F8N.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3F8N-query.scw
PDB file :
Tito_Scwrl_3F8N.pdb
: