Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MHFEAYPPEVNSANIYAGPGPDSMLAAARAWRSLDVEMTAVQRSFNRTLLSLMDAWAGPVVMQLMEAAKPFVRWLTDLCVQLSEVERQIHEIVRAYEWAHHDMVPLAQIYNNRAERQILIDNNALGQFTAQIADLDQEYDDFWDEDGEVMRDYRLRVSDALSKLTPWKAPPPIAHSTVLVAPVSPSTASSRTDT
4W4K Chain:B ((2-173))
-HFEAYPPEVNSANIYAGPGPDSMLAAARAWRSLDVEMTAVQRSFNRTLLSLMDAWAGPVVMQLMEAAKPFVRWLTDLCVQLSEVERQIHEIVRAYEWAHHDMVPLAQIYNNRAERQILIDNNALGQFTAQIADLDQEYDDFWDEDGEVMRDYRLRVSDALSKLTPWKAPPPI---------------------
General information:
TITO was launched using:
RESULT:
Template:
4W4K.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -40400 for 1067 contacts (-37.9/contact) +
2D Compatibility (PS) -18816 + (NN) -9377 + (LL) 1248
1D Compatibility (HY) -24400 + (ID) 8600
Total energy: -100345.0 ( -94.04 by residue)
QMean score : 0.393
(partial model without unconserved sides chains):
PDB file :
Tito_4W4K.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4W4K-query.scw
PDB file :
Tito_Scwrl_4W4K.pdb
: