Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSQVTDMRSNSQGLSLTDSVYERLLSERIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPGGSISAGMAIYDTMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAIQAEQFAVIKKEMFRLNAEFTGQPIERIEADSDRDRWFTAAEALEYGFVDHIITRAHVNGEAQ
4U0G Chain:Z ((11-185))
----------------TDSVYERLLSERIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPGGSISAG-AIYDT-VLAPCDIATYA---GAASGEFLLAAGTKGKRYALPHARIL-HQPLGGVTGSAADIAIQAEQFAVIKKE-FRLNAEFTGQPIERIEADSDRDRWFTAAEALEYGFVDHIIT---------
General information:
TITO was launched using:
RESULT:
Template:
4U0G.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -96755 for 1192 contacts (-81.2/contact) +
2D Compatibility (PS) -18630 + (NN) -7886 + (LL) 2584
1D Compatibility (HY) -21600 + (ID) 8250
Total energy: -150537.0 ( -126.29 by residue)
QMean score : 0.401
(partial model without unconserved sides chains):
PDB file :
Tito_4U0G.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4U0G-query.scw
PDB file :
Tito_Scwrl_4U0G.pdb
: