Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTSLD-LTGRTAIITGASRGIGLAIAQQLAAAGAHVVLTARRQEAADEAAAQVGDRAL---GVGAHAVDEDAARRCVDLTLERFGSVDILINNAGTNPAYGPLLEQDHARFAKIFDVNLWAPLMWTSLVVTAWMGEHGGAVVNTASIGGMHQSPAMGMYNATKAALIHVTKQLALELSPR-IRVNAICPGVVRTRLAEALW--KDHEDPLAATIALGRIGEPADIASAVAFLVSDAASWITGETMIIDGGLLLGNALGFRAAPSTEH
3O4R Chain:B ((10-256))
---RDPLANKVALVTASTDGIGFAIARRLAQDGAHVVVSSRKQQNVDQAVATLQGEGLSVTGTVCHVGKAEDRERLVATAVKLHGGIDILVSNAAVNPFFGSIMDVTEEVWDKTLDINVKAPALMTKAVVPEMEKRGGGSVVIVSSIAAFSPSPGFSPYNVSKTALLGLTKTLAIELAPRNIRVNCLAPGLIKTSFSRMLWMDKEKEESMKETLRIRRLGEPEDCAGIVSFLCSEDASYITGETVVVGGG-----------------
General information:
TITO was launched using:
RESULT:
Template:
3O4R.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -169461 for 2047 contacts (-82.8/contact) +
2D Compatibility (PS) -25705 + (NN) -7093 + (LL) 1208
1D Compatibility (HY) -21200 + (ID) 4800
Total energy: -227051.0 ( -110.92 by residue)
QMean score : 0.523
(partial model without unconserved sides chains):
PDB file :
Tito_3O4R.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3O4R-query.scw
PDB file :
Tito_Scwrl_3O4R.pdb
: