Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTSSEPAHGATPKRSPSEGSADNAALCDALAVEHATIYGYGIVSALSPPG----VNFLVADALKQHRHRRDDVIVMLSARGVTAPIAAAGYQL-------PMQVSSAADAARLAVRMENDGATAWRAVVEHA--ETADDRVFASTALTESAVMATRWNRVLGAWPITAAFPGGDE
2C2J Chain:A ((43-187))
----------------EDLKKSVQALQNTLTELQALQLQTKQAHWNVSGTLWYTLHELLQDHYEGISKFADDVAERQLSVGASSDGRAITIVAASRLPEIPGGFLDDAQVIQFFTYQYETVGQRIHQRVGDVEKVDPTTANLLQEVEHIIEKYQWQMRAFL--------------
General information:
TITO was launched using:
RESULT:
Template:
2C2J.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -45634 for 990 contacts (-46.1/contact) +
2D Compatibility (PS) -14473 + (NN) -8522 + (LL) 444
1D Compatibility (HY) 1600 + (ID) 750
Total energy: -67335.0 ( -68.02 by residue)
QMean score : 0.361
(partial model without unconserved sides chains):
PDB file :
Tito_2C2J.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2C2J-query.scw
PDB file :
Tito_Scwrl_2C2J.pdb
: