Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEPDVAGAPASKPEPASTGAASAAQLSGYSRVLLKLGGEMFGGGQVGLDPDVVAQVARQIADVVRGGVQIAVVIGGGNFFRGAQLQQLGMERTRSDYMGMLGTVMNSLALQDFLEKEGIVTRVQTAITMGQVAEPYLPLRAVRHLEKGRVVIFGAGMGLPYFSTDTTAAQRALEIGADVVLMAKAVDGVFAEDPRVNPEAELLTAVSHREVLDRGLRVADATAFSLCMDNGMPILVFNLLTDGNIARAVRGEKIGTLVTT
3NWY Chain:C ((48-281))
---------------------------SGYSRVLLKLGGEMFGGGQVGLDPDVVAQVARQIADVVRGGVQIAVVIGGGNFFRGAQLQQLGMERTRSDYMGMLGTVMNSLALQDFLEKEGIVTRVQTAITMGQVAEPYLPLRAVRHLEKGRVVIFGAGMGLPYFSTDTTAAQRALEIGADVVLMAKAVDGVFAEDPR----AELLTAVSHREVLDRGLRVADATAFSLCMDNGMPILVFNLLTDGNIARAVRGEKIGTLVTT
General information:
TITO was launched using:
RESULT:
Template:
3NWY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -218698 for 1940 contacts (-112.7/contact) +
2D Compatibility (PS) -25396 + (NN) -11342 + (LL) 1236
1D Compatibility (HY) -34400 + (ID) 11400
Total energy: -300000.0 ( -154.64 by residue)
QMean score : 0.568
(partial model without unconserved sides chains):
PDB file :
Tito_3NWY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3NWY-query.scw
PDB file :
Tito_Scwrl_3NWY.pdb
: