Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIRSRQPLLDALGVDLPDE-LLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDALFHRHPDRSEGDLAKLRASVVNTQALADVARRLCAEGLGVH--VLLGRGEANTGGADKSSILADGMESLLGAIYLQHGMEK--AREVILRLFGP-LLDAAPTLGAGLDWKTSLQELTAARGLGAPSY-LVTSTGPDHDKEFTAVVVVMDSEYGS-GVGRSKKEAEQKAAAAAWKALEVLDNAMPGKTSA
4M2Z Chain:B ((5-218))
-----EQLEKKLGYTFKDKSLLEKALTHVSYSKKEH----YETLEFLGDALVNFFIVDLLVQYSPNKREGFLSPLKAYLISEEFF-----NLLAQKLELHKFIRIKRGKIN------ETIIGDVFEALWAAVYIDSGRDANFTRELFYKLFKEDILSAIKEGRVKKDYKTILQEITQKRWKERPEYRLISVEGPHHKKKF--IVEAKIKEYRTLGEGKSKKEAEQRAAEELIKLLE------------
General information:
TITO was launched using:
RESULT:
Template:
4M2Z.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -97374 for 1461 contacts (-66.6/contact) +
2D Compatibility (PS) -22783 + (NN) -13856 + (LL) 1524
1D Compatibility (HY) -17200 + (ID) 4100
Total energy: -153789.0 ( -105.26 by residue)
QMean score : 0.481
(partial model without unconserved sides chains):
PDB file :
Tito_4M2Z.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4M2Z-query.scw
PDB file :
Tito_Scwrl_4M2Z.pdb
: