Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAFPRYGQSVAADIAAEALHGEHGDLASSVYAMATLFALDRAGAVHTIQGLCRGYDVVILDRYVASNAAYSAARLHENAAGKAAAWVQRIEFARLGLPKPDWQVLLAVSAELAGERSRGRAQRDPGRARDNYERDAELQQRTGAVYAELAAQGWGGRWLVVGADVDPGRLAATLAPPDVPS
1N5L Chain:B ((1-208))
MLIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAFPRYGQSVAADIAAEALHGEHGDLASSVYAMATLFALDRAGAVHTIQGLCRGYDVVILDRYVASNAAYSAARLHENAAGKAAAWVQRIEFARLGLPKPDWQVLLAVSAELAGERSRGRA-----RARDNYERDAELQQRTGAVYAELAAQGWGGRWLVVGADVDPGRLAATLA------
General information:
TITO was launched using:
RESULT:
Template:
1N5L.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -109665 for 1716 contacts (-63.9/contact) +
2D Compatibility (PS) -23007 + (NN) -17351 + (LL) -500
1D Compatibility (HY) -24400 + (ID) 10150
Total energy: -185073.0 ( -107.85 by residue)
QMean score : 0.885
(partial model without unconserved sides chains):
PDB file :
Tito_1N5L.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1N5L-query.scw
PDB file :
Tito_Scwrl_1N5L.pdb
: