Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPDVDWNMLRGNATQAAAGAYVPYSRFAVGAAALVDDGRVVTGCNVENVSYGLTLCAECAVVCALHSTGGGRLLALACVDGHGSVLMPCGRCRQVLLEHGGSELLIDHPVRPRRLGDLLPDAFGLDDLPRERR
4F3W Chain:D ((7-126))
--DIDWKQLRDKATQVAAGAYAPYSRFPVGAAALVDDGRVVTGCNVENVSYGLALCAECGVVCALHATGGGRLVALACVDGRGAPLMPCGRCRQLLFEHGGPELLVDHLAGPRRLGDLLPEP-----------
General information:
TITO was launched using:
RESULT:
Template:
4F3W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -90805 for 963 contacts (-94.3/contact) +
2D Compatibility (PS) -12965 + (NN) -7257 + (LL) 492
1D Compatibility (HY) -14800 + (ID) 4800
Total energy: -130135.0 ( -135.13 by residue)
QMean score : 0.509
(partial model without unconserved sides chains):
PDB file :
Tito_4F3W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4F3W-query.scw
PDB file :
Tito_Scwrl_4F3W.pdb
: