Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTDLITVKKLGSRIGAQIDGVRLGGDLDPAAVNEIRAALLAHKVVFFRGQHQLDDAEQLAFAGLLGTPIGHPAAIALADDAPIITPINSEFGKANRWHTDVTFAANYPAASVLRAVSLPSYGGSTLWANTAAAYAELPEPLKCLTENLWALHTNRYDYVTTKPLTAAQRAFRQVFEKPDFRTEHPVVRVHPETGERTLLAGDFVRSFVGLDSHESRVLFEVLQRRITMPENTIRWNWAPGDVAIWDNRATQHRAIDDYDDQHRLMHRVTLMGDVPVDVYGQASRVISGAPMEIAG
4CVY Chain:B ((5-290))
----ITVKKLGSRIGAQIDGVRLGGDLDPAAVNEIRAALLAHKVVFFRGQHQLDDAEQLAFAGLLGTPI------------------------ANRWHTDVTFAANYPAASVLRAVSLPSYGGSTLWANTAAAYAELPEPLKCLTENLWALHTNR----------------------PDFRTEHPVVRVHPETGERTLLAGDFVRSFVGLDSHESRVLFEVLQRRITMPENTIRWNWAPGDVAIWDNRATQHRAIDDYDDQHRLMHRVTLMGDVPVDVYGQASRVISGAP-----
General information:
TITO was launched using:
RESULT:
Template:
4CVY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -111147 for 1976 contacts (-56.2/contact) +
2D Compatibility (PS) -26227 + (NN) -16200 + (LL) 3984
1D Compatibility (HY) -31200 + (ID) 12000
Total energy: -192790.0 ( -97.57 by residue)
QMean score : 0.555
(partial model without unconserved sides chains):
PDB file :
Tito_4CVY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4CVY-query.scw
PDB file :
Tito_Scwrl_4CVY.pdb
: