Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIFKVGDTVVYPHHGAALVEAIETRTIKGEQKEYLVLKVAQGDLTVRVPAENAEYVGVRDVVGQEGLDKVFQVLRAPHTEE--PTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQERGLSAGEKRMLAKARQILVGELALAESTDDAKAETILDEVLAAAS
2LT3 Chain:A ((3-112))
---------------------------------------------------HMGSVGLREIISEEDVKQVYSILKEKD-ISVDSTTWNRRYREYMEKIKTGSVFEIAEVLRDLYLLKGDKDLSFGERKMLDTARSLLIKELSLAKDCSEDEIESDLKKIFNL--
General information:
TITO was launched using:
RESULT:
Template:
2LT3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -20175 for 763 contacts (-26.4/contact) +
2D Compatibility (PS) -11335 + (NN) -3480 + (LL) 4656
1D Compatibility (HY) -11200 + (ID) 1800
Total energy: -43334.0 ( -56.79 by residue)
QMean score : 0.675
(partial model without unconserved sides chains):
PDB file :
Tito_2LT3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LT3-query.scw
PDB file :
Tito_Scwrl_2LT3.pdb
: