Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPVVKINAIEVPAGAGPELEKRFAHRAHAVENSPGFLGFQLLRPVKGEERYFVVTHWESDEAFQAWANGPAIA---AHAGHRANPVATGASLLE-FEVVLDVGGTGKTA
1IUJ Chain:B ((3-103))
---VTMNRIPVRPEYAEQFEEAFRQRARLVDRMPGFIRNLVLRPKNPGDPYVVMTLWESEEAFRAWTESPAFKEGHARSGTLPKEAFLGPNRLEAFEVVLDSEG-----
General information:
TITO was launched using:
RESULT:
Template:
1IUJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -29455 for 590 contacts (-49.9/contact) +
2D Compatibility (PS) -10542 + (NN) -2451 + (LL) 400
1D Compatibility (HY) -7600 + (ID) 2000
Total energy: -51648.0 ( -87.54 by residue)
QMean score : 0.485
(partial model without unconserved sides chains):
PDB file :
Tito_1IUJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1IUJ-query.scw
PDB file :
Tito_Scwrl_1IUJ.pdb
: