Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVYTG------------SDAGDHASAPQPS-GSGSVPASVNVPGLVVAAVWAVGLVAGLVALTIGHLAVAAAALVVAVM--------APWCR-----VAYIAHGQHRVCGETLRGTPAGETASFPTGWRGLRFSTR
2JOZ Chain:A ((1-135))
MIMVSGCQQQKEETPFYYGTWDEGRAPGPTDGVKSATVTFTEDEVVETEVMEGRGEVQLPFMAYKVISQSTDGSIEIQYLGPYYPLKSTLKRGENGTLIWEQNGQRKTMTRIESKTGREEKDEKSKSLEHHHHHH-
General information:
TITO was launched using:
RESULT:
Template:
2JOZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -41609 for 613 contacts (-67.9/contact) +
2D Compatibility (PS) -11632 + (NN) 1735 + (LL) 100
1D Compatibility (HY) -400 + (ID) 750
Total energy: -52556.0 ( -85.74 by residue)
QMean score : 0.132
(partial model without unconserved sides chains):
PDB file :
Tito_2JOZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2JOZ-query.scw
PDB file :
Tito_Scwrl_2JOZ.pdb
: