Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTTSAASQASLPRGRRTARPSGDDRELAILATAENLLEDRPLADISVDDLAKGAGISRPTFYFYFPSKEAVLLTLLDRVVNQADMALQTLAENPADTDRENMWRTGINVFFETFGSHKAVTRAGQAARATSVEVAELWSTFMQKWIAYTAAVIDAERDRGAAPRTLPAHELATALNLMNERTLFASFAGEQPSVPEARVLDTLVHIWVTSIYGENR
5F27 Chain:A ((28-218))
-----------------------DRELAILATAENLLEDRPLADISVDDLAKGAGISRPTFYFYFPSKEAVLLTLLDRVVNQADMALQTLAEN----DRENMWRTGINVFFETFGSHKAVTRAGQAARATSVEVAELWSTFMQKWIAYTAAVIDAERDRGAAPRTLPAHELATALNLMNERTLFASFAGEQPSVPEARVLDTLVHIWVTSIYGE--
General information:
TITO was launched using:
RESULT:
Template:
5F27.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -108399 for 1364 contacts (-79.5/contact) +
2D Compatibility (PS) -20542 + (NN) -16244 + (LL) 824
1D Compatibility (HY) -24800 + (ID) 9350
Total energy: -178511.0 ( -130.87 by residue)
QMean score : 0.567
(partial model without unconserved sides chains):
PDB file :
Tito_5F27.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5F27-query.scw
PDB file :
Tito_Scwrl_5F27.pdb
: