Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSIHSSGGVDMKKTASAVWQGGLKDGKGTLSTESGALKDNP-YGFNTRFEGAPGTNPEELIGAAHAGCFSMALSMMLGEAGLTAERIETRAEVTLDKQSDGFAITAVHLVLRARVPGADAQTFEQIANKAKAGCPVSKVLNAKISLDASLDG
1NYE Chain:A ((21-162))
--------MTIHKKGQAHWEGDIKRGKGTVSTESGVLN-QQPYGFNTRFEGEKGTNPEELIGAAHAACFSMALSLMLGEAGFTPTSIDTTADVSLDKVDAGFAITKIALKSEVAVPGIDASTFDGIIQKAKAGCPVSQVLKAEITLDYQLKS
General information:
TITO was launched using:
RESULT:
Template:
1NYE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -64966 for 943 contacts (-68.9/contact) +
2D Compatibility (PS) -15056 + (NN) -4624 + (LL) -48
1D Compatibility (HY) -13200 + (ID) 4400
Total energy: -102294.0 ( -108.48 by residue)
QMean score : 0.450
(partial model without unconserved sides chains):
PDB file :
Tito_1NYE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NYE-query.scw
PDB file :
Tito_Scwrl_1NYE.pdb
: