Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MAVDMFIKIGDVKGESKDKTHAEEIDVLAWSWGMSQSGSMHMGGGGGAGKVNVQDLSFTKYIDKSTPNLMMACSSGKHYPQAKLTIRKAGGENQVEYLIITLKEVLVSSVSTGGSGGEDRLTENVTLNFAQVQVDYQPQKADGA-KDGGPVKYGWNIRQNVQA |
1Y12 Chain:A ((2-162)) | -AVDMFIKIGDVKGESKDKTHAEEIDVLAWSWGMSQSGSMHMGGGG-AGKVNVQDLSFTKYIDKSTPNLMMACSSGKHYPQAKLTIRKAGGENQVEYLIITLKEVLVSSVSTGGSGGEDRLTENVTLNFAQVQVDYQPQKADGAKD-GGPVKYGWNIRQNVQA |
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General information:
TITO was launched using:
| RESULT:
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Template: 1Y12.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 51291 for 1017 contacts (50.4/contact) +
2D Compatibility (PS) -14957 + (NN) 5306 + (LL) -40
1D Compatibility (HY) 10400 + (ID) 700
Total energy: 51300.0 ( 50.44 by residue)
QMean score : -0.068
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