Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MATVIDRHSQPTWRDFLELTKPKVVVLMLITSLIGMLLATKAPLDGFVPWQVLIFGNLGIGLCAGAAAAVNHVVDRRIDSI--MARTHKRPLAEGRVSPSMALGFALLLALAGMAVLLAFTNPLTAWLTLASLLGYAALYTGFLKRATPQNIVIGGLAGAAPPLLGWVAITGH---LSAEPLLLVLIIFAWTPPHFWALCIHRKDEYAKADIPMLPVTHGERYTKLHILLYTLVLFAVSLMPFVIHMSGLVYLLCALALGARFLDWAWALYCDSRPHAAIKTFKYSIVYLFLLFMALLVDHYLPLKLLL
4TQ3 Chain:A ((15-301))
-------------SKYLRLLRPVAWLCFLLPYAVGFGFG----ITPNASLQHAVLGLLSFAFWMAFSFTINALYDRDVDRLHDGLNLSMQPLVTGEISVREAWLYCIAFLALSLATAAAINEKFFLAMLGANIIGYVYSAPPRFKAWPVMDVICNALAAVLAFYAGLS-IGGAEVPIAIYPAAFFLAATFYIPTAV-----SDYEFDKKAGLKNTPVFFGPERALKS--LYPLSAITVILWAYVFLMAERIEIKVISPLIIAYTLIYTFIINSRWDGEKLNVSPNLILTPFGIISALFIAYGFAVISV-
General information:
TITO was launched using:
RESULT:
Template:
4TQ3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -292701 for 2316 contacts (-126.4/contact) +
2D Compatibility (PS) -29061 + (NN) -17814 + (LL) 2584
1D Compatibility (HY) -14800 + (ID) 2400
Total energy: -354192.0 ( -152.93 by residue)
QMean score : 0.354
(partial model without unconserved sides chains):
PDB file :
Tito_4TQ3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4TQ3-query.scw
PDB file :
Tito_Scwrl_4TQ3.pdb
: