Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
----MTQQHDTHSKAIGYLLWIFGF----------TGSHRFYYGKPIT--GTIWFFT---FGLFFIGWII----DLFLIPSM--DREADRRFQGGNLDYNVAWILLTFLGV---------LGVHRMYMGKWITGIIYLFTG---------GLFFLGVLYDFWTLNGQVSERNGPQRI-----------------
4OMV Chain:A ((3-205))
AMLLYTKKDDIYSDIVRMILLIKGANAKIVDVSKEENSKHLEELNIITPNGNIPTLSTDDFAVYRLSVIIEAIEDLYPFPPMFPVFPKQRANARILLEYVNKTFLQNIIKLQSPDLDEKQANEIKMLMQRDIISTYKKIVSERAQNINVLTLIITFVFYYFIKLKISIPTKDKNIIKEIKELLSEPNFIKTIKA
General information:
TITO was launched using:
RESULT:
Template:
4OMV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -120101 for 824 contacts (-145.8/contact) +
2D Compatibility (PS) -13346 + (NN) 1499 + (LL) 0
1D Compatibility (HY) -10000 + (ID) 1500
Total energy: -143448.0 ( -174.09 by residue)
QMean score : 0.207
(partial model without unconserved sides chains):
PDB file :
Tito_4OMV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4OMV-query.scw
PDB file :
Tito_Scwrl_4OMV.pdb
: