Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MLPAMRTGLLCALLGVTAPAWAEYVTVISFGGANKEAQETAFYKPFKSATGNRVVHGSY---NGDLAKLKRMVEISHVSWDVVEVEAPELARGCEEGLFEKLDMAKVGDPADFVPGA-------VQPCGVGIFVWTTLLAYNPGKVAG-SPQGWADFWDVKKFPGKRGLRWGAKYSLEFALMADGVAPKDVYQTLATPAGVERAFRKLDELKPYI-HWWKSGQDPVRDLADGTVVMSSAYNGRIAAAQAEKQRLAMVWS--GGVYDFDFWALPVGVWKKQLAEEFIRFASQPEQQKAFAENIAYGPANRKAVGLLDPQVAANLPTAPQNMQNAVGMNVA-FWAEHGEALEQRFQNWAKR |
| 1POT Chain:A ((3-323)) | ---------------------NNTLYFYNWTEYV----PPGLLEQFTKETGIKVIYSTYESNETMYAKLKTYK--D-GAYDLVVPSTYYVDKMRKEGMIQKIDKSKLTNFSNLDPDMLNKPFDPNNDYSIPYIWGATAIGVNGDAVDPKSVTSWADLWKPE-YKGSLLLTDDAREVFQMALRKLGYSGN----TT-DPKEIEAAYNELKKLMPNVAAFN--SDNPANPYMEGEVNLGMIWNGSAFVARQAGTPIDVVWPKEGGIFWMDSLAIPANAKNKEGALKLINFLLRPDVAKQVAETIGYPTPNLAARKLLSPEVANDKTLYPD-AETIKNGEWQNDVGAASSIYEEYYQKLKAG |
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General information:
TITO was launched using:
| RESULT:
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Template: 1POT.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -99984 for 2574 contacts (-38.8/contact) +
2D Compatibility (PS) -33163 + (NN) -16632 + (LL) 3132
1D Compatibility (HY) -16400 + (ID) 3550
Total energy: -166597.0 ( -64.72 by residue)
QMean score : 0.432
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