Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPKLCNVVVLISGSGSNLQALIDSLRDGATPARIRAVISNRADAYGLERARQAGIQTEVLDHKAYADRESFDEALAQRIDAHEPHLVILAGFMRILSADFVRHYQGRLLNIHPSLLPRHKGLHTHQRALEAGDREHGCSVHFVTEELDGGPLVVQAVIPVESQDTPERLARRVHEEEHRIYPLAMRWFAEGRLRLGEQGALLDGQALPATGHQIRTKEIRNA
1JKX Chain:B ((2-208))
-----NIVVLISGNGSNLQAIIDACKTNKIKGTVRAVFSNKADAFGLERARQAGIATHTLIASAFDSREAYDRELIHEIDMYAPDVVVLAGFMRILSPAFVSHYAGRLLNIHPSLLPKYPGLHTHRQALENGDEEHGTSVHFVTDELDGGPVILQAKVPVFAGDSEDDITARVQTQEHAIYPLVISWFADGRLKMHENAAWLDGQRLPPQGYA---------
General information:
TITO was launched using:
RESULT:
Template:
1JKX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -153677 for 1713 contacts (-89.7/contact) +
2D Compatibility (PS) -23569 + (NN) -15493 + (LL) 1232
1D Compatibility (HY) -22800 + (ID) 6100
Total energy: -220407.0 ( -128.67 by residue)
QMean score : 0.629
(partial model without unconserved sides chains):
PDB file :
Tito_1JKX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JKX-query.scw
PDB file :
Tito_Scwrl_1JKX.pdb
: