Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDSHSPIATVAQALRRAERILVITGAGLSADSGMPTYRGLGGLYNGRTEEGLPIEAALSGPMLRRDPALCWKYLAELGKACLAARPNAGHEAIAELQKHKPECWVLTQNIDGFHRQAGSPAERLIEIHGELAPLYCQSCGAE---SGGLEEHLHGQLPPRCAACGG-VLRPPVVLFEEMLPEEAIDTLYRELR--KGFDAVLVVGTT------ASFPYIVEPVLRTRQAGGFTAEVNPGVTDLSERVDVKMTGRALDIMPQVVSHIYR |
| 1YC2 Chain:E ((5-248)) | ------IRKAAEILAKSKHAVVFTGAGISAESGIPTFRGEDGLWRKYDPEEV---ASISG--FKRNPRAFWEFSMEM-KDKLFAEPNPAHYAIAELERMGIVKAVITQNIDMLHQRAGS--RRVLELHGSMDKLDCLDCHETYDWSEFVEDFNKGEI-PRCRKCGSYYVKPRVVLFGEPLPQR---TLFEAIEEAKHCDAFMVVGSSLVVYPAAELPYI------AKKAGAKMIIVNAEPTMADPIFDVKIIGKAGEVLPKIVEEVKR |
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General information:
TITO was launched using:
| RESULT:
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Template: 1YC2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -119300 for 1909 contacts (-62.5/contact) +
2D Compatibility (PS) -24998 + (NN) -12701 + (LL) 804
1D Compatibility (HY) -18400 + (ID) 4750
Total energy: -179345.0 ( -93.95 by residue)
QMean score : 0.513
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