Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MLAQFTPSALADLANCVLRIPLALQQPSSVAMTLPSLTSFMPHFGAPALLLLQLLAALPATAAETDATPLRFSVMESWSMPLVRLQRGQPIDGIVYDITRSLARQVGRKALYHPYPRGRIEQAMNAGEIDVRCYISPAWLSHDFPGYRWSVALLVQRDILVAREGFA-PIPEALPAQRIGTVLGYSYPR-LQALFDIGRLRRDDARTQDLVLEKLRAGRYRYAVSHQLSLHWSNRQAPGQPPLQ--EAAQLEETAVSCMVRDSAEVPVEAILKTFEEMKRSGEIEEILQRYR |
2YLN Chain:A ((53-276)) | ---------------------------------------------------------------INNKGTVTVGTE-GTYAPFTYHDKDGKLTGYDVEVTRAVAEKLGVKVEFKETQWDSMMAGLKAGRFDVVANQVGLTSPERQATFDKSEPYSWSGAVLVAHNDSNIKSIADIKGVKTAQSLTSNYGEKAKA----AGAQLVPVDGLAQSLTLIEQKRADATLNDELAVLDYLKKNPNAGVKIVWSAPADEKVGSGLIVNKGNDEAVAKFSTAINELKADGTLKKLGEQFF |
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General information:
TITO was launched using:
| RESULT:
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Template: 2YLN.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -125870 for 1804 contacts (-69.8/contact) +
2D Compatibility (PS) -23156 + (NN) -6110 + (LL) 6100
1D Compatibility (HY) -800 + (ID) 1450
Total energy: -151286.0 ( -83.86 by residue)
QMean score : 0.423
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