Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTAQLIDGKAIAANLRQQIAQRVT--ERRQQGLRVPGLAVILVGTDPASQVYVAHKRKDCEEVGFLSQAYDLPAETSQDDLLALIDRLNDDPAIDGILVQLPLPAHLDASLLLERIHPDKDVDGFHPYNIGRL--AQRMPLLRPCTPKGIMTLLASTGADLYGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRFTR--DLADHVSRADLVVVAAGKPGLVKGEWIKEGAIVIDVGINRQADG------RLVGDVEYEVAAQRASWITPVPGGVGPMTRACLLENTLHAAEHLHD |
4CJX Chain:B ((25-309)) | --AVVIDGRAVAKAIQKELTEEVALLERRYKGRR-PGLSTIICGKRKDSQTYVRLKRKAAAACGFRNFSVELPANVTQEALEREVIRLNEEEACHSIVVQLPLPPHIDKVAALSKIKPEKDADCLLPVNVGQLHIRERNPAIVPCTASAVMELLRCSGVEICGKRVVVLGRGDIAGLPVATLLANEDATVTVVHSATPLCDIADIVRASDIVVSAAGQPGLVRGEWIKLGAAVIDVGTTPVADPSKVPGYRLVGDVCFDVARKRAAYITPVPGGVGPVTVSMLLKNTLTMFKRSVR |
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General information:
TITO was launched using:
| RESULT:
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Template: 4CJX.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -207244 for 2354 contacts (-88.0/contact) +
2D Compatibility (PS) -29829 + (NN) -14259 + (LL) 452
1D Compatibility (HY) -20800 + (ID) 6600
Total energy: -278280.0 ( -118.22 by residue)
QMean score : 0.578
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