Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKNAMALTLAGLLAAPSLGFAAAPDAVMVFARQGDKGSVSVGDKHFRTQAFKVRLVNAAKSEISLKNSCLVAQSAAGQSFRLDT---VDEELTADTLKPGASVEGDAIFASEDDAVYGASLVRLSDRCK
1LMI Chain:A ((61-108))
--------------------------------------------------------------VTPAVSQFNARTADGINYRVLWQAAGPDTISGATIPQGEQSTGKIYFDVTGPSPTIVAMNNGMEDLL
General information:
TITO was launched using:
RESULT:
Template:
1LMI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -7280 for 218 contacts (-33.4/contact) +
2D Compatibility (PS) -4412 + (NN) 1982 + (LL) 4704
1D Compatibility (HY) -1200 + (ID) 450
Total energy: -6656.0 ( -30.53 by residue)
QMean score : 0.464
(partial model without unconserved sides chains):
PDB file :
Tito_1LMI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1LMI-query.scw
PDB file :
Tito_Scwrl_1LMI.pdb
: