Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTRAINDPGNEDPGSLLETDADALLGGAAAQAPEERCRLAAQACIRACERY-LALCTESSR-----EQRQHAGDCADLCRLAALLLERRSPWAPAACELAARYALACAERCDGDEPLERECAGACRRFVEACRPLLPA
3LMF Chain:A ((7-113))
-----------------------------TDQNLQACIDACNHCYRTCLRMAMNHCLEAGGKHVEADHLRLMMNCAEICQTSLNFMLSGSRFSPKVCGVCAEICDACAKSCEQL-DGMEECVQTCRQCAEHCRKMAAL
General information:
TITO was launched using:
RESULT:
Template:
3LMF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -16159 for 682 contacts (-23.7/contact) +
2D Compatibility (PS) -9888 + (NN) -731 + (LL) 892
1D Compatibility (HY) 3200 + (ID) 600
Total energy: -23286.0 ( -34.14 by residue)
QMean score : 0.161
(partial model without unconserved sides chains):
PDB file :
Tito_3LMF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LMF-query.scw
PDB file :
Tito_Scwrl_3LMF.pdb
: