Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MIPCEEEIQIRDMARQFAQERLKPFAADWDREHRFPAEAIREMADLGFLGMLVPEEWGGAQTGHLAYAMALEEIAAGDGACSTIMSVHNSVGCMPIHKFGSAEQKERFLRPLAQGSMLGAFALTEPQAGSDASFLKTRARRDGDHYVLNGAKQFITSGSHAGMVIVFAVTDPDAGKRGISAFIVPTDTPGYEVVRIEDKLGQHASDTCQLAFNDLRIPATLRLGEEGEGYRIALANLEGGRIGIAAQAVGMARAAFEAARDYAHERETFGKPIIEHQAVAFRLADMATRIAVARQMVHHAASLREAGLPCLTEASMAKLFASEMAEEVCSAAIQTLGGYGYLKDFPVERIYRDVRVCQIYEGTSDVQRLVIARSL |
4U83 Chain:B ((8-382)) | MLLTDTQEQIREAARDFAQERLAPGAAARDREHAFPRAELTEMGALGFLGMLAPEEWGGSDLDMVAYALALEEIAAGDGACSTIVSVHSSVGCMPILRFGTEDQKRRFLPKMACGEWIGGFALTEP--------LKTRARLDGDHYVIDGSKQFITSGKNGNVVIVFAVTDPAAGKKGISAFIVPTDTPGYEVMSVEHKLGQHSSDTCALGFTNMRVPVENRLGAEGEGYKIALANLEGGRIGIAAQAVGMARAAFEAARDYARERITFGKPIIEHQAVAFRLADMATRIETARQMVLHAAALREAGKPCLTEASMAKLVASEMAEQVCSAAIQIHGGYGYLADYPVERIYRDVRVCQIYEGTSDVQRLVIARGL |
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General information:
TITO was launched using:
| RESULT:
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Template: 4U83.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -210235 for 3411 contacts (-61.6/contact) +
2D Compatibility (PS) -40726 + (NN) -22693 + (LL) 236
1D Compatibility (HY) -39600 + (ID) 14000
Total energy: -327018.0 ( -95.87 by residue)
QMean score : 0.487
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