Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MQGSLMLDIGGTWLTAEDRQILRHPEVGGLIIFARNIEHPAQVRELCAAIRAI-RPDLLLAVDQEGGRVQRLRQGFVRLPAMRAIADNPNAEE---LAEHCGWLMATEVQAVGLDLSFAPVLDLDHQRSAVVGSRAFEGDPERAALLAGAFIRGMHAAGMAATGKHFPGHGWAEADSHVAIPEDARSLEEIRRSDLVPFARL--AGQLDALMPAHVIYPQVDPQPAGFSRRWLQEILRGELKFDGVIFSDDLSMAGAHVVGDAASRIEAALAAGCDMGLVCNDRASAELALAALQRLKVTPPSRLQRMRGKG-YANTDYRQQPRWLEALSALRAAQLID |
4GVG Chain:B ((2-327)) | --GPVMLNVEGCELDAEEREILAHPLVGGLILFTRNYHDPEQLRELVRQIRAASRNHLVVAVDQEGGRVQRFREGFTRLPAAQSFFALHGLEEGGRLAQEAGWLMASEMIAMDIDISFAPVLDVGHI-SAAIGERSYHADPAKALAMATRFIDGMHDAGMKTTGKHFPGHGAVT-----ETPCDPRPETDIRGKDMSVFRTLISENKLDAIMPAHVIYRAIDPRPASGSPYWLKTVLRQELGFDGVIFSDDLS------MGSYAERAQASLDAGCDMILVCNNRKG---AVSVLDNLSPIKAERVTRLYHKGSFSRRELMDSARWKTASAQL------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4GVG.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -178284 for 2786 contacts (-64.0/contact) +
2D Compatibility (PS) -33854 + (NN) -21704 + (LL) 2500
1D Compatibility (HY) -26800 + (ID) 7950
Total energy: -266092.0 ( -95.51 by residue)
QMean score : 0.536
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