Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSMTPIARAVAFAALGSSITVPTLAHAEFIKDSKASIELRNFYFNRDFRQEGASQSKAEEWAQGFLLRYESGYTEGTIGFGVDAIGLLGVKLDSSPDRSGTGLLKRDRET-------GRAQDDYGEAGITAKLRASKSTLKIGTLTPKLPVIMPNDSRLLPQTFQGGALNSMEIDGLTLDAGRLKKVNQRDSSDNEDMTITGGGKRNIVVRSGLTSDKFDFAGGSYKWTDNLSTSYHYGKLDNFYKQHYLGLVHTLPIADKQSLKSDIRWARSTDDGSS-----------------------NVDNKALNAMFTYSLGYHAFGVGYQKMSGDTGFAYIN-----GADPYLVNFIQIGDFANKDEKSWQARYDYNFAGVGIPGLTFMTRYVKGDNIDLLTTSGEGKEWERDMDIAYVFQSGPLKNLGVKWRNATMR--TNYTNDYDENRLIVSYTLPLW |
4FRX Chain:B ((7-436)) | --------------------------AGFIEDSKASLTLRNFYINTDNRN-----SKQEEWGQGFILNYQSGFTQGTVGFGVDALGLLGVRL----------------GTVFPLESNGEPVHDFASLGLTAKAKVSNTEFRYGTLQPKLPVVTYNDGRLLPVTFEGGQVTSTDLKDFTLVAGQLEHSKGRNSTDNRSLSIAGANGSSASSRD---SNKFYYAGGDYKVNKDLTLQYYYGNLDDFYKQHFLGLIHNWQIG-PGVLKTDLRAFDSSSDGKNGSRSGRADGYVSSGYYGSGVTKGEVDNRAFSGLFTYTVSGHSIGAGYQILNGDSDFPFLNRGDGEGSTAYLITDVQIGKFQRAGERTWQVRYGYDFATVGVPGLTFNTIYLSGDKIK--TARGDQSEWERDISLAYVIPDGTFKGLGFTWKNASFRSG-----DQDENRLIVSYTLPL- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4FRX.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 27843 for 2811 contacts (9.9/contact) +
2D Compatibility (PS) -36525 + (NN) 3070 + (LL) 2984
1D Compatibility (HY) -35600 + (ID) 9400
Total energy: -47628.0 ( -16.94 by residue)
QMean score : 0.243
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